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LOC18096981 transcription factor bHLH71 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18096981, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18096981
Gene description
transcription factor bHLH71
Locus tag
POPTR_003G093200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC18096981 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 3 NC_037287.2 (11958276..11961010, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 3 NC_037287.1 (12041853..12044600, complement)

Chromosome 3 - NC_037287.2Genomic Context describing neighboring genes Neighboring gene protein TORNADO 2 Neighboring gene E3 ubiquitin-protein ligase Os04g0590900 Neighboring gene uncharacterized protein At4g17910 Neighboring gene replication factor C subunit 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH71

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037287.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    11958276..11961010 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006385602.3 → XP_006385664.2  transcription factor bHLH71

    UniProtKB/TrEMBL
    A0A2K2B479
    Conserved Domains (1) summary
    pfam00010
    Location:99 → 150
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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