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LOC18094155 transcription factor bHLH71 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18094155, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18094155
Gene description
transcription factor bHLH71
Locus tag
POPTR_001G141100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC18094155 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (11517808..11520552)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (11342845..11345746)

Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 12 Neighboring gene RING-H2 finger protein ATL29 Neighboring gene E3 ubiquitin-protein ligase Os04g0590900 Neighboring gene 28 kDa ribonucleoprotein, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH71

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    11517808..11520552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006368327.3 → XP_006368389.1  transcription factor bHLH71

    See identical proteins and their annotated locations for XP_006368389.1

    UniProtKB/TrEMBL
    A0A3N7EHH8, U5GN12
    Conserved Domains (1) summary
    pfam00010
    Location:99 → 150
    HLH; Helix-loop-helix DNA-binding domain

RNA

  1. XR_002983789.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials