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F28B4.3 C-type LECtin [ Caenorhabditis elegans ]

Gene ID: 180612, updated on 18-Sep-2024

Summary

Official Symbol
F28B4.3
Official Full Name
C-type LECtin
Primary source
WormBase:WBGene00017892
Locus tag
CELE_F28B4.3
See related
AllianceGenome:WB:WBGene00017892
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See F28B4.3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
23
Sequence:
Chromosome: X; NC_003284.9 (3227501..3235408, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Protein irg-7 Neighboring gene N-terminal methionine N(alpha)-acetyltransferase NatE

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
C-type LECtin
NP_001367788.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    3227501..3235408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001380930.3NP_001367788.1  C-type LECtin [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q19853
    Conserved Domains (7) summary
    smart00034
    Location:11811313
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    smart00604
    Location:181319
    MD; MD domain
    PRK12757
    Location:19482021
    PRK12757; cell division protein FtsN; Provisional
    cd00054
    Location:373405
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:873900
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00198
    Location:424537
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam00092
    Location:20282206
    VWA; von Willebrand factor type A domain