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LOC18054793 protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 [ Citrus x clementina ]

Gene ID: 18054793, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18054793
Gene description
protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
Locus tag
CICLE_v10010768mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18054793 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006263303.1 (2034022..2037736, complement)

NW_006263303.1Genomic Context describing neighboring genes Neighboring gene cellulose synthase A catalytic subunit 1 [UDP-forming] Neighboring gene transcription factor HY5 Neighboring gene uncharacterized LOC18054794 Neighboring gene EG45-like domain containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006263303 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006263303.1 Reference Citrus_clementina_v1.0

    Range
    2034022..2037736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024192227.1 → XP_024047995.1  protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 isoform X4

    Conserved Domains (1) summary
    smart00389
    Location:273 → 320
    HOX; Homeodomain

  2. XM_024192226.1 → XP_024047994.1  protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 isoform X2

    Conserved Domains (1) summary
    smart00389
    Location:273 → 320
    HOX; Homeodomain

  3. XM_024192225.1 → XP_024047993.1  protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 isoform X1

    Conserved Domains (1) summary
    smart00389
    Location:273 → 320
    HOX; Homeodomain

  4. XM_006450410.2 → XP_006450473.1  protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 isoform X3

    See identical proteins and their annotated locations for XP_006450473.1

    UniProtKB/TrEMBL
    V4TT40
    Conserved Domains (1) summary
    smart00389
    Location:273 → 320
    HOX; Homeodomain
Nucleotide Protein
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