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LOC18054594 transcription factor ILR3 [ Citrus x clementina ]

Gene ID: 18054594, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18054594
Gene description
transcription factor ILR3
Locus tag
CICLE_v10009354mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18054594 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006263303.1 (20550289..20553222)

NW_006263303.1Genomic Context describing neighboring genes Neighboring gene photosynthetic NDH subunit of lumenal location 3, chloroplastic Neighboring gene thioredoxin-like protein CXXS1 Neighboring gene uncharacterized LOC18054552 Neighboring gene probable galacturonosyltransferase 12 Neighboring gene (E)-beta-farnesene synthase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006263303 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ILR3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006263303.1 Reference Citrus_clementina_v1.0

    Range
    20550289..20553222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006452084.2 → XP_006452147.1  transcription factor ILR3

    See identical proteins and their annotated locations for XP_006452147.1

    UniProtKB/TrEMBL
    V4UH16
    Conserved Domains (2) summary
    smart00353
    Location:83 → 132
    HLH; helix loop helix domain
    pfam06005
    Location:125 → 174
    DUF904; Protein of unknown function (DUF904)
Nucleotide Protein
Heading Accession and Version

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