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LOC18052960 transcription factor TCP20 [ Citrus x clementina ]

Gene ID: 18052960, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18052960
Gene description
transcription factor TCP20
Locus tag
CICLE_v10015977mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18052960 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262688.1 (13240417..13242965, complement)

NW_006262688.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g14080 Neighboring gene ACT domain-containing protein ACR6 Neighboring gene probable metal-nicotianamine transporter YSL6 Neighboring gene protein LAZY 1 Neighboring gene ABC transporter I family member 11, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262688 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TCP20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262688.1 Reference Citrus_clementina_v1.0

    Range
    13240417..13242965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024190140.1 → XP_024045908.1  transcription factor TCP20

    UniProtKB/TrEMBL
    V4U311
    Conserved Domains (1) summary
    pfam03634
    Location:69 → 128
    TCP; TCP family transcription factor

  2. XM_006446964.2 → XP_006447027.1  transcription factor TCP20

    See identical proteins and their annotated locations for XP_006447027.1

    UniProtKB/TrEMBL
    V4U311
    Conserved Domains (1) summary
    pfam03634
    Location:69 → 128
    TCP; TCP family transcription factor

  3. XM_006446963.2 → XP_006447026.1  transcription factor TCP20

    See identical proteins and their annotated locations for XP_006447026.1

    UniProtKB/TrEMBL
    V4U311
    Conserved Domains (1) summary
    pfam03634
    Location:69 → 128
    TCP; TCP family transcription factor
Nucleotide Protein
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