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LOC18052841 squamosa promoter-binding protein 1 [ Citrus x clementina ]

Gene ID: 18052841, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18052841
Gene description
squamosa promoter-binding protein 1
Locus tag
CICLE_v10016841mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18052841 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262688.1 (15774326..15777114, complement)

NW_006262688.1Genomic Context describing neighboring genes Neighboring gene protein TPX2 Neighboring gene putative E3 ubiquitin-protein ligase RING1a Neighboring gene mitotic checkpoint serine/threonine-protein kinase BUB1 Neighboring gene protein FAR-RED IMPAIRED RESPONSE 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262688 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding protein 1
Names
squamosa promoter-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262688.1 Reference Citrus_clementina_v1.0

    Range
    15774326..15777114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024192076.1 → XP_024047844.1  squamosa promoter-binding protein 1

    UniProtKB/TrEMBL
    V4U8P3, V4W3D8
    Conserved Domains (1) summary
    pfam03110
    Location:65 → 139
    SBP; SBP domain

RNA

  1. XR_002907332.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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