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LOC18050740 transcription activator GLK1 [ Citrus x clementina ]

Gene ID: 18050740, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18050740
Gene description
transcription activator GLK1
Locus tag
CICLE_v10015266mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18050740 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262688.1 (10399884..10403929, complement)

NW_006262688.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome non-ATPase regulatory subunit 2 homolog A Neighboring gene protein E6 Neighboring gene uncharacterized LOC18050741 Neighboring gene dnaJ homolog subfamily B member 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262688 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription activator GLK1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262688.1 Reference Citrus_clementina_v1.0

    Range
    10399884..10403929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006446631.2 → XP_006446694.1  transcription activator GLK1

    See identical proteins and their annotated locations for XP_006446694.1

    UniProtKB/TrEMBL
    V4U758, V4W1Z8
    Conserved Domains (2) summary
    TIGR01557
    Location:169 → 224
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam12941
    Location:279 → 403
    HCV_NS5a_C; HCV NS5a protein C-terminal region
Nucleotide Protein
Heading Accession and Version

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