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LOC18050392 homeobox-leucine zipper protein HDG2 [ Citrus x clementina ]

Gene ID: 18050392, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18050392
Gene description
homeobox-leucine zipper protein HDG2
Locus tag
CICLE_v10014373mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18050392 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262688.1 (21915094..21921763)

NW_006262688.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112100967 Neighboring gene uncharacterized LOC112100968 Neighboring gene putative F-box protein At3g29830 Neighboring gene F-box protein At3g62230-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262688 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein HDG2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262688.1 Reference Citrus_clementina_v1.0

    Range
    21915094..21921763
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024190261.1 → XP_024046029.1  homeobox-leucine zipper protein HDG2 isoform X2

    UniProtKB/TrEMBL
    V4W461
    Conserved Domains (3) summary
    cd08875
    Location:276 → 500
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:93 → 146
    Homeobox; Homeobox domain
    cl27820
    Location:35 → 165
    Abdominal-A; Homeobox protein

  2. XM_024190259.1 → XP_024046027.1  homeobox-leucine zipper protein HDG2 isoform X1

    Conserved Domains (3) summary
    cd08875
    Location:276 → 500
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:93 → 146
    Homeobox; Homeobox domain
    cl27820
    Location:35 → 165
    Abdominal-A; Homeobox protein

  3. XM_024190260.1 → XP_024046028.1  homeobox-leucine zipper protein HDG2 isoform X1

    Conserved Domains (3) summary
    cd08875
    Location:276 → 500
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:93 → 146
    Homeobox; Homeobox domain
    cl27820
    Location:35 → 165
    Abdominal-A; Homeobox protein

  4. XM_024190263.1 → XP_024046031.1  homeobox-leucine zipper protein HDG2 isoform X3

    Conserved Domains (3) summary
    cd08875
    Location:244 → 468
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:61 → 114
    Homeobox; Homeobox domain
    cl27820
    Location:3 → 133
    Abdominal-A; Homeobox protein

  5. XM_024190264.1 → XP_024046032.1  homeobox-leucine zipper protein HDG2 isoform X4

    Conserved Domains (3) summary
    cd08875
    Location:244 → 468
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:61 → 114
    Homeobox; Homeobox domain
    cl27820
    Location:3 → 133
    Abdominal-A; Homeobox protein
Nucleotide Protein
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