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LOC18049843 homeobox-leucine zipper protein ATHB-4 [ Citrus x clementina ]

Gene ID: 18049843, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18049843
Gene description
homeobox-leucine zipper protein ATHB-4
Locus tag
CICLE_v10021501mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18049843 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262339.1 (50397039..50399381)

NW_006262339.1Genomic Context describing neighboring genes Neighboring gene transcription termination factor MTEF18, mitochondrial Neighboring gene poly(rC)-binding protein 4 Neighboring gene uncharacterized LOC112100056 Neighboring gene putative dual specificity protein phosphatase DSP8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262339 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein ATHB-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262339.1 Reference Citrus_clementina_v1.0

    Range
    50397039..50399381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006445333.2 → XP_006445396.1  homeobox-leucine zipper protein ATHB-4

    See identical proteins and their annotated locations for XP_006445396.1

    UniProtKB/TrEMBL
    V4U3L9, V4U8Y0
    Conserved Domains (3) summary
    smart00340
    Location:186 → 229
    HALZ; homeobox associated leucin zipper
    smart00389
    Location:130 → 184
    HOX; Homeodomain
    pfam04618
    Location:8 → 101
    HD-ZIP_N; HD-ZIP protein N-terminus
Nucleotide Protein
Heading Accession and Version

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