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LOC18049009 dof zinc finger protein DOF2.5 [ Citrus x clementina ]

Gene ID: 18049009, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18049009
Gene description
dof zinc finger protein DOF2.5
Locus tag
CICLE_v10020725mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18049009 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262339.1 (47943204..47945135, complement)

NW_006262339.1Genomic Context describing neighboring genes Neighboring gene aluminum-activated malate transporter 10 Neighboring gene ORM1-like protein 3 Neighboring gene transcription repressor MYB6 Neighboring gene pyridoxine/pyridoxamine 5'-phosphate oxidase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262339 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dof zinc finger protein DOF2.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262339.1 Reference Citrus_clementina_v1.0

    Range
    47943204..47945135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024187856.1 → XP_024043624.1  dof zinc finger protein DOF2.5 isoform X2

    Conserved Domains (1) summary
    pfam02701
    Location:30 → 85
    zf-Dof; Dof domain, zinc finger

  2. XM_024187855.1 → XP_024043623.1  dof zinc finger protein DOF2.5 isoform X1

    UniProtKB/TrEMBL
    V4U1W4
    Conserved Domains (1) summary
    pfam02701
    Location:48 → 103
    zf-Dof; Dof domain, zinc finger
Nucleotide Protein
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