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LOC18047507 basic helix-loop-helix protein A [ Citrus x clementina ]

Gene ID: 18047507, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18047507
Gene description
basic helix-loop-helix protein A
Locus tag
CICLE_v10019118mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18047507 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262339.1 (44628343..44634019, complement)

NW_006262339.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18047505 Neighboring gene general transcription and DNA repair factor IIH helicase subunit XPD Neighboring gene uncharacterized LOC112100338 Neighboring gene aluminum-activated malate transporter 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262339 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic helix-loop-helix protein A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262339.1 Reference Citrus_clementina_v1.0

    Range
    44628343..44634019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006444030.2 → XP_006444093.1  basic helix-loop-helix protein A isoform X1

    See identical proteins and their annotated locations for XP_006444093.1

    UniProtKB/TrEMBL
    V4TAJ7, V4VVL5
    Conserved Domains (2) summary
    cd00083
    Location:492 → 542
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam14215
    Location:10 → 192
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal

  2. XM_024189731.1 → XP_024045499.1  basic helix-loop-helix protein A isoform X1

    UniProtKB/TrEMBL
    V4TAJ7, V4VVL5
    Conserved Domains (2) summary
    cd00083
    Location:492 → 542
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam14215
    Location:10 → 192
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal

  3. XM_024189732.1 → XP_024045500.1  basic helix-loop-helix protein A isoform X2

    UniProtKB/TrEMBL
    V4TV03
    Conserved Domains (2) summary
    cd00083
    Location:487 → 537
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam14215
    Location:10 → 187
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal

  4. XM_024189733.1 → XP_024045501.1  basic helix-loop-helix protein A isoform X3

    UniProtKB/TrEMBL
    V4VVL5
    Conserved Domains (2) summary
    cd00083
    Location:481 → 531
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam14215
    Location:10 → 192
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
Nucleotide Protein
Heading Accession and Version

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