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LOC18047304 zinc finger protein ZAT1 [ Citrus x clementina ]

Gene ID: 18047304, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18047304
Gene description
zinc finger protein ZAT1
Locus tag
CICLE_v10021224mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18047304 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262339.1 (5572320..5573542)

NW_006262339.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18050196 Neighboring gene putative pentatricopeptide repeat-containing protein At5g47460 Neighboring gene protein transport protein SEC16B homolog Neighboring gene asparagine--tRNA ligase, chloroplastic/mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262339 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein ZAT1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262339.1 Reference Citrus_clementina_v1.0

    Range
    5572320..5573542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006440245.2 → XP_006440308.1  zinc finger protein ZAT1

    See identical proteins and their annotated locations for XP_006440308.1

    UniProtKB/TrEMBL
    V4T088
    Conserved Domains (2) summary
    sd00017
    Location:211 → 236
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13912
    Location:247 → 270
    zf-C2H2_6; C2H2-type zinc finger
Nucleotide Protein
Heading Accession and Version

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