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LOC18046724 MADS-box protein SOC1 [ Citrus x clementina ]

Gene ID: 18046724, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18046724
Gene description
MADS-box protein SOC1
Locus tag
CICLE_v10022568mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18046724 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262339.1 (49481071..49487557)

NW_006262339.1Genomic Context describing neighboring genes Neighboring gene CRS2-associated factor 1, mitochondrial Neighboring gene lysophospholipid acyltransferase LPEAT2 Neighboring gene probable fructokinase-7 Neighboring gene agamous-like MADS-box protein AGL6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262339 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MADS-box protein SOC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262339.1 Reference Citrus_clementina_v1.0

    Range
    49481071..49487557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006445134.2 → XP_006445197.1  MADS-box protein SOC1

    See identical proteins and their annotated locations for XP_006445197.1

    UniProtKB/TrEMBL
    V4TDM8
    Conserved Domains (2) summary
    cd00265
    Location:3 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:84 → 170
    K-box; K-box region

  2. XM_006445133.2 → XP_006445196.1  MADS-box protein SOC1

    See identical proteins and their annotated locations for XP_006445196.1

    UniProtKB/TrEMBL
    V4TDM8
    Conserved Domains (2) summary
    cd00265
    Location:3 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:84 → 170
    K-box; K-box region

  3. XM_024189420.1 → XP_024045188.1  MADS-box protein SOC1

    UniProtKB/TrEMBL
    V4TDM8
    Conserved Domains (2) summary
    cd00265
    Location:3 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:84 → 170
    K-box; K-box region

RNA

  1. XR_002906652.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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