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LOC18044720 squamosa promoter-binding-like protein 2 [ Citrus x clementina ]

Gene ID: 18044720, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18044720
Gene description
squamosa promoter-binding-like protein 2
Locus tag
CICLE_v10031391mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18044720 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262274.1 (21170537..21176805)

NW_006262274.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene 4-coumarate--CoA ligase-like 1 Neighboring gene ranBP2-type zinc finger protein At1g67325 Neighboring gene uncharacterized LOC18044722

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262274 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding-like protein 2
Names
squamosa promoter-binding protein 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262274.1 Reference Citrus_clementina_v1.0

    Range
    21170537..21176805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024186763.1 → XP_024042531.1  squamosa promoter-binding-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A191XS22, V4TI25
    Conserved Domains (1) summary
    pfam03110
    Location:186 → 260
    SBP; SBP domain

  2. XM_024186761.1 → XP_024042529.1  squamosa promoter-binding-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A191XS22, V4TI25
    Conserved Domains (1) summary
    pfam03110
    Location:186 → 260
    SBP; SBP domain

  3. XM_024186760.1 → XP_024042528.1  squamosa promoter-binding-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A191XS22, V4TI25
    Conserved Domains (1) summary
    pfam03110
    Location:186 → 260
    SBP; SBP domain

  4. XM_024186762.1 → XP_024042530.1  squamosa promoter-binding-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A191XS22, V4TI25
    Conserved Domains (1) summary
    pfam03110
    Location:186 → 260
    SBP; SBP domain

  5. XM_024186764.1 → XP_024042532.1  squamosa promoter-binding-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A191XS22, V4TI25
    Conserved Domains (1) summary
    pfam03110
    Location:186 → 260
    SBP; SBP domain

  6. XM_024186767.1 → XP_024042535.1  squamosa promoter-binding-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A191XS22, V4TI25
    Conserved Domains (1) summary
    pfam03110
    Location:186 → 260
    SBP; SBP domain

  7. XM_006437950.2 → XP_006438013.1  squamosa promoter-binding-like protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006438013.1

    UniProtKB/TrEMBL
    A0A191XS22, V4TI25
    Conserved Domains (1) summary
    pfam03110
    Location:186 → 260
    SBP; SBP domain

  8. XM_024186768.1 → XP_024042536.1  squamosa promoter-binding-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A191XS22
    Conserved Domains (1) summary
    pfam03110
    Location:155 → 229
    SBP; SBP domain

  9. XM_024186759.1 → XP_024042527.1  squamosa promoter-binding-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A191XS22, V4TI25
    Conserved Domains (1) summary
    pfam03110
    Location:186 → 260
    SBP; SBP domain

  10. XM_024186766.1 → XP_024042534.1  squamosa promoter-binding-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A191XS22, V4TI25
    Conserved Domains (1) summary
    pfam03110
    Location:186 → 260
    SBP; SBP domain

  11. XM_024186765.1 → XP_024042533.1  squamosa promoter-binding-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A191XS22, V4TI25
    Conserved Domains (1) summary
    pfam03110
    Location:186 → 260
    SBP; SBP domain
Nucleotide Protein
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