U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC18043514 myb family transcription factor PHL8 [ Citrus x clementina ]

Gene ID: 18043514, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC18043514
Gene description
myb family transcription factor PHL8
Locus tag
CICLE_v10031937mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC18043514 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262274.1 (23956788..23959007, complement)

NW_006262274.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112099199 Neighboring gene small nucleolar RNA Z247 Neighboring gene protein HOTHEAD Neighboring gene cyclic dof factor 3 Neighboring gene transcription factor CSA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006262274 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
myb family transcription factor PHL8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262274.1 Reference Citrus_clementina_v1.0

    Range
    23956788..23959007 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024186058.1 → XP_024041826.1  myb family transcription factor PHL8 isoform X2

    UniProtKB/TrEMBL
    V4TJZ6
    Conserved Domains (2) summary
    TIGR01557
    Location:17 → 70
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:113 → 164
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

  2. XM_006438645.2 → XP_006438708.1  myb family transcription factor PHL8 isoform X3

    See identical proteins and their annotated locations for XP_006438708.1

    UniProtKB/TrEMBL
    V4SVN1, V4TJZ6
    Conserved Domains (2) summary
    TIGR01557
    Location:17 → 73
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:116 → 161
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

  3. XM_024186057.1 → XP_024041825.1  myb family transcription factor PHL8 isoform X1

    UniProtKB/TrEMBL
    V4TJZ6
    Conserved Domains (2) summary
    TIGR01557
    Location:17 → 73
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:116 → 167
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases