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LOC18043439 transcription factor PIF4 [ Citrus x clementina ]

Gene ID: 18043439, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18043439
Gene description
transcription factor PIF4
Locus tag
CICLE_v10031028mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18043439 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262274.1 (15042791..15048017, complement)

NW_006262274.1Genomic Context describing neighboring genes Neighboring gene probable polyamine oxidase 2 Neighboring gene N-acetyl-D-glucosamine kinase Neighboring gene uncharacterized oxidoreductase At1g06690, chloroplastic Neighboring gene reticulon-like protein B8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262274 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor PIF4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262274.1 Reference Citrus_clementina_v1.0

    Range
    15042791..15048017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006437006.2 → XP_006437069.1  transcription factor PIF4 isoform X3

    See identical proteins and their annotated locations for XP_006437069.1

    UniProtKB/TrEMBL
    V4TAN0, V4VD55
    Conserved Domains (1) summary
    smart00353
    Location:348 → 396
    HLH; helix loop helix domain

  2. XM_024186529.1 → XP_024042297.1  transcription factor PIF4 isoform X2

    UniProtKB/TrEMBL
    V4TFE8
    Conserved Domains (1) summary
    smart00353
    Location:357 → 405
    HLH; helix loop helix domain

  3. XM_006437005.2 → XP_006437068.1  transcription factor PIF4 isoform X1

    See identical proteins and their annotated locations for XP_006437068.1

    UniProtKB/TrEMBL
    V4SR76, V4TFE8
    Conserved Domains (1) summary
    smart00353
    Location:357 → 405
    HLH; helix loop helix domain

RNA

  1. XR_002906062.1 RNA Sequence

  2. XR_002906063.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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