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LOC18042629 sodium channel and clathrin linker 1 [ Citrus x clementina ]

Gene ID: 18042629, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18042629
Gene description
sodium channel and clathrin linker 1
Locus tag
CICLE_v10003722mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18042629 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262201.1 (31386494..31391217)

NW_006262201.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18042848 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC112098151 Neighboring gene bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic Neighboring gene uncharacterized LOC18042794

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262201 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium channel and clathrin linker 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262201.1 Reference Citrus_clementina_v1.0

    Range
    31386494..31391217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024183928.1 → XP_024039696.1  sodium channel and clathrin linker 1

    Conserved Domains (3) summary
    smart00380
    Location:638 → 696
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    pfam07899
    Location:389 → 520
    Frigida; Frigida-like protein
    cl25732
    Location:76 → 359
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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