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LOC18041816 ABSCISIC ACID-INSENSITIVE 5-like protein 5 [ Citrus x clementina ]

Gene ID: 18041816, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18041816
Gene description
ABSCISIC ACID-INSENSITIVE 5-like protein 5
Locus tag
CICLE_v10001159mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18041816 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262201.1 (40138158..40141829, complement)

NW_006262201.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18042827 Neighboring gene THO complex subunit 5A Neighboring gene protein DCL homolog, chloroplastic Neighboring gene serine/threonine-protein kinase tricorner

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262201 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ABSCISIC ACID-INSENSITIVE 5-like protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262201.1 Reference Citrus_clementina_v1.0

    Range
    40138158..40141829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006434693.2 → XP_006434756.1  ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X1

    See identical proteins and their annotated locations for XP_006434756.1

    UniProtKB/TrEMBL
    V4TE89
    Conserved Domains (1) summary
    cd14707
    Location:367 → 421
    bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_006434692.2 → XP_006434755.1  ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X2

    See identical proteins and their annotated locations for XP_006434755.1

    UniProtKB/TrEMBL
    V4T912
    Conserved Domains (1) summary
    cd14707
    Location:367 → 421
    bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain

  3. XM_024183973.1 → XP_024039741.1  ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X3

    Conserved Domains (1) summary
    cd14707
    Location:367 → 389
    bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain

RNA

  1. XR_002905338.1 RNA Sequence

  2. XR_002905337.1 RNA Sequence

  3. XR_002905339.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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