U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC18041505 ethylene-responsive transcription factor RAP2-13 [ Citrus x clementina ]

Gene ID: 18041505, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC18041505
Gene description
ethylene-responsive transcription factor RAP2-13
Locus tag
CICLE_v10001563mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC18041505 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262201.1 (36550230..36552255, complement)

NW_006262201.1Genomic Context describing neighboring genes Neighboring gene probable trehalose-phosphate phosphatase D Neighboring gene endoplasmic reticulum-Golgi intermediate compartment protein 3 Neighboring gene uncharacterized WD repeat-containing protein C2A9.03 Neighboring gene probable beta-D-xylosidase 7

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006262201 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ethylene-responsive transcription factor RAP2-13; ethylene-responsive transcription factor RAP2-4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262201.1 Reference Citrus_clementina_v1.0

    Range
    36550230..36552255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006433954.2 → XP_006434017.1  ethylene-responsive transcription factor RAP2-4 isoform X2

    See identical proteins and their annotated locations for XP_006434017.1

    UniProtKB/TrEMBL
    V4T2A7
    Conserved Domains (1) summary
    smart00380
    Location:118 → 180
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  2. XM_006433955.2 → XP_006434018.1  ethylene-responsive transcription factor RAP2-13 isoform X1

    See identical proteins and their annotated locations for XP_006434018.1

    UniProtKB/TrEMBL
    V4SHV4
    Conserved Domains (1) summary
    smart00380
    Location:179 → 241
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases