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LOC18040866 agamous-like MADS-box protein AGL104 [ Citrus x clementina ]

Gene ID: 18040866, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18040866
Gene description
agamous-like MADS-box protein AGL104
Locus tag
CICLE_v10003964mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262201.1 (36715125..36718443, complement)

NW_006262201.1Genomic Context describing neighboring genes Neighboring gene low affinity sulfate transporter 3 Neighboring gene zinc finger CCCH domain-containing protein 15 homolog Neighboring gene heavy metal-associated isoprenylated plant protein 24 Neighboring gene aspartic proteinase-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262201 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL104

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262201.1 Reference Citrus_clementina_v1.0

    Range
    36715125..36718443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024184638.1 → XP_024040406.1  agamous-like MADS-box protein AGL104

    UniProtKB/TrEMBL
    V4V5L5
    Conserved Domains (1) summary
    cd00265
    Location:2 → 75
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
Nucleotide Protein
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