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LOC18040658 transcription factor bHLH61 [ Citrus x clementina ]

Gene ID: 18040658, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18040658
Gene description
transcription factor bHLH61
Locus tag
CICLE_v10001683mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18040658 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262201.1 (35173233..35174945, complement)

NW_006262201.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112098273 Neighboring gene auxin-responsive protein IAA8 Neighboring gene phosphoglycerate mutase-like protein 1 Neighboring gene phosphoglycerate mutase-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262201 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH61

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262201.1 Reference Citrus_clementina_v1.0

    Range
    35173233..35174945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006433679.2 → XP_006433742.1  transcription factor bHLH61

    See identical proteins and their annotated locations for XP_006433742.1

    UniProtKB/TrEMBL
    V4T1H3
    Conserved Domains (2) summary
    cd04873
    Location:275 → 316
    ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
    cd00083
    Location:185 → 232
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases