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LOC18038027 probable WRKY transcription factor 33 [ Citrus x clementina ]

Gene ID: 18038027, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18038027
Gene description
probable WRKY transcription factor 33
Locus tag
CICLE_v10011386mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18038027 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262139.1 (17113665..17116638, complement)

NW_006262139.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18037926 Neighboring gene CASP-like protein 4B1 Neighboring gene F-box/LRR-repeat protein 3 Neighboring gene solute carrier family 40 member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262139 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable WRKY transcription factor 33

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262139.1 Reference Citrus_clementina_v1.0

    Range
    17113665..17116638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024182280.1 → XP_024038048.1  probable WRKY transcription factor 33 isoform X2

    Conserved Domains (2) summary
    smart00774
    Location:389 → 446
    WRKY; DNA binding domain
    pfam03106
    Location:222 → 276
    WRKY; WRKY DNA -binding domain

  2. XM_006429442.2 → XP_006429505.1  probable WRKY transcription factor 33 isoform X1

    See identical proteins and their annotated locations for XP_006429505.1

    UniProtKB/TrEMBL
    V4SUS1
    Conserved Domains (1) summary
    pfam03106
    Location:392 → 447
    WRKY; WRKY DNA -binding domain
Nucleotide Protein
Heading Accession and Version

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