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LOC18031853 transcription factor bHLH91 [ Citrus x clementina ]

Gene ID: 18031853, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18031853
Gene description
transcription factor bHLH91
Locus tag
CICLE_v100069401mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC18031853 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006261964.1 (27100723..27101770)

NW_006261964.1Genomic Context describing neighboring genes Neighboring gene MDIS1-interacting receptor like kinase 2 Neighboring gene MDIS1-interacting receptor like kinase 2 Neighboring gene structural maintenance of chromosomes protein 2-1 Neighboring gene NO-associated protein 1, chloroplastic/mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006261964 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anther wall tapetum development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH91

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006261964.1 Reference Citrus_clementina_v1.0

    Range
    27100723..27101770
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006421583.2 → XP_006421646.2  transcription factor bHLH91

    UniProtKB/TrEMBL
    V4SD39
    Conserved Domains (1) summary
    cd00083
    Location:74 → 125
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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