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LOC18025714 transcription factor PIF1 [ Eutrema salsugineum ]

Gene ID: 18025714, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18025714
Gene description
transcription factor PIF1
Locus tag
EUTSA_v10001974mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18025714 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256895.1 (10501450..10504126, complement)

NW_006256895.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit 4 homolog B Neighboring gene uncharacterized LOC18025713 Neighboring gene putative receptor-like protein kinase At4g00960 Neighboring gene CLIP-associated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256895 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor PIF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256895.1 Reference Eutsalg1_0

    Range
    10501450..10504126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006408867.2 → XP_006408930.1  transcription factor PIF1

    See identical proteins and their annotated locations for XP_006408930.1

    UniProtKB/TrEMBL
    V4MD07
    Conserved Domains (1) summary
    smart00353
    Location:302 → 350
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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