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LOC18024977 GATA transcription factor 17 [ Eutrema salsugineum ]

Gene ID: 18024977, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18024977
Gene description
GATA transcription factor 17
Locus tag
EUTSA_v10021612mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18024977 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256885.1 (3595328..3596643)

NW_006256885.1Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 33 Neighboring gene putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial Neighboring gene uncharacterized LOC112088973 Neighboring gene COBRA-like protein 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256885 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GATA transcription factor 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256885.1 Reference Eutsalg1_0

    Range
    3595328..3596643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006406733.2 → XP_006406796.1  GATA transcription factor 17

    See identical proteins and their annotated locations for XP_006406796.1

    UniProtKB/TrEMBL
    V4LWN8
    Conserved Domains (2) summary
    smart00401
    Location:42 → 80
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    pfam00320
    Location:44 → 78
    GATA; GATA zinc finger
Nucleotide Protein
Heading Accession and Version

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