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LOC18024129 nuclear transcription factor Y subunit A-6 [ Eutrema salsugineum ]

Gene ID: 18024129, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18024129
Gene description
nuclear transcription factor Y subunit A-6
Locus tag
EUTSA_v10021250mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18024129 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256885.1 (4746530..4749022, complement)

NW_006256885.1Genomic Context describing neighboring genes Neighboring gene probable GTP diphosphokinase RSH2, chloroplastic Neighboring gene scarecrow-like protein 29 Neighboring gene polyadenylate-binding protein-interacting protein 4 Neighboring gene protein Brevis radix-like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256885 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit A-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256885.1 Reference Eutsalg1_0

    Range
    4746530..4749022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024159418.1 → XP_024015186.1  nuclear transcription factor Y subunit A-6 isoform X4

    UniProtKB/TrEMBL
    V4LXM9
    Conserved Domains (1) summary
    pfam02045
    Location:182 → 237
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  2. XM_024159417.1 → XP_024015185.1  nuclear transcription factor Y subunit A-6 isoform X3

    UniProtKB/TrEMBL
    V4LXM9
    Conserved Domains (1) summary
    pfam02045
    Location:184 → 239
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  3. XM_024159416.1 → XP_024015184.1  nuclear transcription factor Y subunit A-6 isoform X2

    UniProtKB/TrEMBL
    V4LXM9
    Conserved Domains (1) summary
    pfam02045
    Location:184 → 239
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  4. XM_024159415.1 → XP_024015183.1  nuclear transcription factor Y subunit A-6 isoform X1

    UniProtKB/TrEMBL
    V4LXM9
    Conserved Domains (1) summary
    pfam02045
    Location:186 → 241
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  5. XM_024159419.1 → XP_024015187.1  nuclear transcription factor Y subunit A-6 isoform X6

    UniProtKB/TrEMBL
    V4LXM9
    Conserved Domains (1) summary
    pfam02045
    Location:150 → 205
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  6. XM_006407075.2 → XP_006407138.1  nuclear transcription factor Y subunit A-6 isoform X5

    See identical proteins and their annotated locations for XP_006407138.1

    UniProtKB/TrEMBL
    V4LXM9, V4NPX0
    Conserved Domains (1) summary
    pfam02045
    Location:155 → 209
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Nucleotide Protein
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