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LOC18020029 transcription factor ORG3 [ Eutrema salsugineum ]

Gene ID: 18020029, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18020029
Gene description
transcription factor ORG3
Locus tag
EUTSA_v10006191mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18020029 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256838.1 (2368899..2369874)

NW_006256838.1Genomic Context describing neighboring genes Neighboring gene nucleolar protein 10 Neighboring gene transcription factor ORG2 Neighboring gene transcription factor ORG2 Neighboring gene phosphatidylinositol 4-phosphate 5-kinase 4 Neighboring gene probable aquaporin SIP2-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256838 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ORG3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256838.1 Reference Eutsalg1_0

    Range
    2368899..2369874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006402863.2 → XP_006402926.1  transcription factor ORG3

    See identical proteins and their annotated locations for XP_006402926.1

    UniProtKB/TrEMBL
    V4LKV5
    Conserved Domains (1) summary
    cd00083
    Location:72 → 128
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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