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LOC18019468 transcription factor DIVARICATA [ Eutrema salsugineum ]

Gene ID: 18019468, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18019468
Gene description
transcription factor DIVARICATA
Locus tag
EUTSA_v10014410mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18019468 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256829.1 (322269..324038, complement)

NW_006256829.1Genomic Context describing neighboring genes Neighboring gene sulfoquinovosyl transferase SQD2 Neighboring gene uncharacterized acetyltransferase At3g50280 Neighboring gene laccase-10 Neighboring gene protein NRT1/ PTR FAMILY 8.2 Neighboring gene UPF0503 protein At3g09070, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256829 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor DIVARICATA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256829.1 Reference Eutsalg1_0

    Range
    322269..324038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006398582.2 → XP_006398645.1  transcription factor DIVARICATA

    See identical proteins and their annotated locations for XP_006398645.1

    UniProtKB/TrEMBL
    V4LJX8
    Conserved Domains (3) summary
    TIGR01557
    Location:143 → 195
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    smart00717
    Location:145 → 194
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:27 → 74
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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