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LOC18019204 zinc finger CCCH domain-containing protein 65 [ Eutrema salsugineum ]

Gene ID: 18019204, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18019204
Gene description
zinc finger CCCH domain-containing protein 65
Locus tag
EUTSA_v10012834mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18019204 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256829.1 (9597277..9600255)

NW_006256829.1Genomic Context describing neighboring genes Neighboring gene nucleosome assembly protein 1;3 Neighboring gene 30S ribosomal protein S16-2, chloroplastic/mitochondrial Neighboring gene cysteine proteinase COT44 Neighboring gene uncharacterized LOC18019206

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256829 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 65

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256829.1 Reference Eutsalg1_0

    Range
    9597277..9600255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006401202.2 → XP_006401265.1  zinc finger CCCH domain-containing protein 65

    See identical proteins and their annotated locations for XP_006401265.1

    UniProtKB/TrEMBL
    V4LS75
    Conserved Domains (2) summary
    smart00356
    Location:411 → 436
    ZnF_C3H1; zinc finger
    pfam00642
    Location:440 → 460
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Nucleotide Protein
Heading Accession and Version

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