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LOC18017393 transcription factor TGA2 [ Eutrema salsugineum ]

Gene ID: 18017393, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18017393
Gene description
transcription factor TGA2
Locus tag
EUTSA_v10014082mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18017393 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256829.1 (2155899..2161131)

NW_006256829.1Genomic Context describing neighboring genes Neighboring gene fasciclin-like arabinogalactan protein 21 Neighboring gene uncharacterized LOC18017390 Neighboring gene probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 Neighboring gene transcription factor TGA5 Neighboring gene uncharacterized LOC18017500 Neighboring gene protein LNK4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256829 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TGA2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256829.1 Reference Eutsalg1_0

    Range
    2155899..2161131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024155841.1 → XP_024011609.1  transcription factor TGA2 isoform X1

    UniProtKB/TrEMBL
    V4KRR3, V4LY67
    Conserved Domains (3) summary
    cd14686
    Location:47 → 98
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:128 → 204
    DOG1; Seed dormancy control
    cl21462
    Location:46 → 98
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_024155842.1 → XP_024011610.1  transcription factor TGA2 isoform X2

    UniProtKB/TrEMBL
    V4LY67
    Conserved Domains (3) summary
    cd14686
    Location:47 → 98
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:133 → 176
    DOG1; Seed dormancy control
    cl21462
    Location:46 → 98
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  3. XM_006399109.2 → XP_006399172.1  transcription factor TGA2 isoform X1

    See identical proteins and their annotated locations for XP_006399172.1

    UniProtKB/TrEMBL
    V4KRR3, V4LY67
    Conserved Domains (3) summary
    cd14686
    Location:47 → 98
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:128 → 204
    DOG1; Seed dormancy control
    cl21462
    Location:46 → 98
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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