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LOC18016238 transcription factor bHLH28 [ Eutrema salsugineum ]

Gene ID: 18016238, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18016238
Gene description
transcription factor bHLH28
Locus tag
EUTSA_v10000853mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18016238 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256828.1 (2062344..2063948)

NW_006256828.1Genomic Context describing neighboring genes Neighboring gene mitochondrial carnitine/acylcarnitine carrier-like protein Neighboring gene transcription factor bHLH28-like Neighboring gene RNA-binding protein 34 Neighboring gene phosphatidylinositol-glycan biosynthesis class X protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256828 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH28

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256828.1 Reference Eutsalg1_0

    Range
    2062344..2063948
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006398314.1 → XP_006398377.1  transcription factor bHLH28

    See identical proteins and their annotated locations for XP_006398377.1

    UniProtKB/TrEMBL
    V4KPJ8
    Conserved Domains (2) summary
    cd00083
    Location:364 → 411
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam14215
    Location:41 → 225
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
Nucleotide Protein
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