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LOC18015067 transcription factor IND [ Eutrema salsugineum ]

Gene ID: 18015067, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18015067
Gene description
transcription factor IND
Locus tag
EUTSA_v10029526mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18015067 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256756.1 (61024..61738, complement)

NW_006256756.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S13-2 Neighboring gene UDP-glucuronate 4-epimerase 3 Neighboring gene caltractin Neighboring gene scarecrow-like protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256756 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor IND

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256756.1 Reference Eutsalg1_0

    Range
    61024..61738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006396147.2 → XP_006396210.2  transcription factor IND

    UniProtKB/TrEMBL
    V4LD19
    Conserved Domains (1) summary
    smart00353
    Location:115 → 163
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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