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LOC18012874 DELLA protein RGA2 [ Eutrema salsugineum ]

Gene ID: 18012874, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18012874
Gene description
DELLA protein RGA2
Locus tag
EUTSA_v10005482mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18012874 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256547.1 (7687877..7690217)

NW_006256547.1Genomic Context describing neighboring genes Neighboring gene probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic Neighboring gene uncharacterized LOC18012873 Neighboring gene ubiquitin-60S ribosomal protein L40-like Neighboring gene paired amphipathic helix protein Sin3-like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256547 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hyperosmotic salinity response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in jasmonic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of seed germination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of reactive oxygen species metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of seed dormancy process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to abscisic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to ethylene IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in salicylic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DELLA protein RGA2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256547.1 Reference Eutsalg1_0

    Range
    7687877..7690217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006395816.2 → XP_006395878.1  DELLA protein RGA2

    See identical proteins and their annotated locations for XP_006395878.1

    UniProtKB/TrEMBL
    V4KPE3
    Conserved Domains (2) summary
    pfam03514
    Location:251 → 611
    GRAS; GRAS domain family
    pfam12041
    Location:56 → 123
    DELLA; Transcriptional regulator DELLA protein N terminal
Nucleotide Protein
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