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LOC18011858 B3 domain-containing protein At5g25470 [ Eutrema salsugineum ]

Gene ID: 18011858, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18011858
Gene description
B3 domain-containing protein At5g25470
Locus tag
EUTSA_v10004752mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18011858 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256547.1 (3614476..3616738, complement)

NW_006256547.1Genomic Context describing neighboring genes Neighboring gene cytochrome b-c1 complex subunit 7-2 Neighboring gene uncharacterized LOC18011877 Neighboring gene tRNA (cytosine(38)-C(5))-methyltransferase Neighboring gene uncharacterized RNA-binding protein C17H9.04c Neighboring gene uncharacterized LOC18011656

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256547 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B3 domain-containing protein At5g25470

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256547.1 Reference Eutsalg1_0

    Range
    3614476..3616738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006394738.2 → XP_006394800.1  B3 domain-containing protein At5g25470

    See identical proteins and their annotated locations for XP_006394800.1

    UniProtKB/TrEMBL
    V4ML08
    Conserved Domains (2) summary
    smart01019
    Location:19 → 113
    B3; B3 DNA binding domain
    cl15242
    Location:183 → 273
    BfiI_C_EcoRII_N_B3; DNA binding domains of BfiI, EcoRII and plant B3 proteins

  2. XM_024151883.1 → XP_024007651.1  B3 domain-containing protein At5g25470

    UniProtKB/TrEMBL
    V4ML08
    Conserved Domains (2) summary
    smart01019
    Location:19 → 113
    B3; B3 DNA binding domain
    cl15242
    Location:183 → 273
    BfiI_C_EcoRII_N_B3; DNA binding domains of BfiI, EcoRII and plant B3 proteins
Nucleotide Protein
Heading Accession and Version

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