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LOC18010362 transcription factor bHLH112 [ Eutrema salsugineum ]

Gene ID: 18010362, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18010362
Gene description
transcription factor bHLH112
Locus tag
EUTSA_v10023487mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18010362 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256414.1 (2618025..2620504)

NW_006256414.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase CSU1 Neighboring gene uncharacterized LOC112082037 Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene uncharacterized aarF domain-containing protein kinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256414 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH112

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256414.1 Reference Eutsalg1_0

    Range
    2618025..2620504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006391923.2 → XP_006391985.1  transcription factor bHLH112 isoform X1

    See identical proteins and their annotated locations for XP_006391985.1

    UniProtKB/TrEMBL
    V4MDF7
    Conserved Domains (1) summary
    smart00353
    Location:305 → 348
    HLH; helix loop helix domain

  2. XM_006391922.2 → XP_006391984.1  transcription factor bHLH112 isoform X2

    See identical proteins and their annotated locations for XP_006391984.1

    UniProtKB/TrEMBL
    V4JV54
    Conserved Domains (1) summary
    smart00353
    Location:303 → 346
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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