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LOC17899955 transcription factor bHLH153 [ Capsella rubella ]

Gene ID: 17899955, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17899955
Gene description
transcription factor bHLH153
Locus tag
CARUB_v10010563mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17899955 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238923.1 (1791079..1793486)

NW_006238923.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ and TAZ domain-containing protein 3 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g05700 Neighboring gene selenoprotein F Neighboring gene protein FAM136A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238923 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH153

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238923.1 Reference Caprub1_0

    Range
    1791079..1793486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023789947.1 → XP_023645715.1  transcription factor bHLH153

    UniProtKB/TrEMBL
    R0GN35, R0IFS9
    Conserved Domains (1) summary
    smart00353
    Location:35 → 81
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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