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LOC17898323 telomere repeat-binding factor 4 [ Capsella rubella ]

Gene ID: 17898323, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17898323
Gene description
telomere repeat-binding factor 4
Locus tag
CARUB_v10009890mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17898323 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238923.1 (6064829..6067831, complement)

NW_006238923.1Genomic Context describing neighboring genes Neighboring gene probable phospholipid-transporting ATPase 4 Neighboring gene uncharacterized LOC17899127 Neighboring gene U-box domain-containing protein 35 Neighboring gene protein phosphatase 2C 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238923 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telomere repeat-binding factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238923.1 Reference Caprub1_0

    Range
    6064829..6067831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006303997.2 → XP_006304059.1  telomere repeat-binding factor 4 isoform X4

    See identical proteins and their annotated locations for XP_006304059.1

    UniProtKB/TrEMBL
    R0GM01
    Conserved Domains (3) summary
    smart00526
    Location:122 → 186
    H15; Domain in histone families 1 and 5
    smart00717
    Location:5 → 56
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd11660
    Location:7 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  2. XM_023789446.1 → XP_023645214.1  telomere repeat-binding factor 4 isoform X2

  3. XM_006303998.2 → XP_006304060.1  telomere repeat-binding factor 4 isoform X3

    See identical proteins and their annotated locations for XP_006304060.1

    UniProtKB/TrEMBL
    R0IJ62
    Conserved Domains (3) summary
    smart00526
    Location:122 → 187
    H15; Domain in histone families 1 and 5
    smart00717
    Location:5 → 56
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd11660
    Location:7 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  4. XM_006303999.2 → XP_006304061.1  telomere repeat-binding factor 4 isoform X1

    See identical proteins and their annotated locations for XP_006304061.1

    UniProtKB/TrEMBL
    R0I3W9
    Conserved Domains (3) summary
    smart00526
    Location:122 → 187
    H15; Domain in histone families 1 and 5
    smart00717
    Location:5 → 56
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd11660
    Location:7 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
Nucleotide Protein
Heading Accession and Version

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