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LOC17896916 auxin response factor 5 [ Capsella rubella ]

Gene ID: 17896916, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17896916
Gene description
auxin response factor 5
Locus tag
CARUB_v10008258mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17896916 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238923.1 (6898567..6903104)

NW_006238923.1Genomic Context describing neighboring genes Neighboring gene filament-like plant protein 4 Neighboring gene auxin-responsive protein SAUR50 Neighboring gene zinc finger CCCH domain-containing protein 6 Neighboring gene protein IQ-DOMAIN 32

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238923 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238923.1 Reference Caprub1_0

    Range
    6898567..6903104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006306667.2 → XP_006306729.1  auxin response factor 5

    See identical proteins and their annotated locations for XP_006306729.1

    UniProtKB/TrEMBL
    R0GUJ7
    Conserved Domains (3) summary
    pfam02309
    Location:806 → 874
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:159 → 261
    B3; B3 DNA binding domain
    pfam06507
    Location:291 → 368
    Auxin_resp; Auxin response factor

  2. XM_023788905.1 → XP_023644673.1  auxin response factor 5

    UniProtKB/TrEMBL
    R0GUJ7
    Conserved Domains (3) summary
    pfam02309
    Location:806 → 874
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:159 → 261
    B3; B3 DNA binding domain
    pfam06507
    Location:291 → 368
    Auxin_resp; Auxin response factor

  3. XM_023788904.1 → XP_023644672.1  auxin response factor 5

    UniProtKB/TrEMBL
    R0GUJ7
    Conserved Domains (3) summary
    pfam02309
    Location:806 → 874
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:159 → 261
    B3; B3 DNA binding domain
    pfam06507
    Location:291 → 368
    Auxin_resp; Auxin response factor
Nucleotide Protein
Heading Accession and Version

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