U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC17894553 transcription factor bHLH49 [ Capsella rubella ]

Gene ID: 17894553, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC17894553
Gene description
transcription factor bHLH49
Locus tag
CARUB_v10020178mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC17894553 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238922.1 (9285245..9288249)

NW_006238922.1Genomic Context describing neighboring genes Neighboring gene putative defensin-like protein 263 Neighboring gene WPP domain-interacting tail-anchored protein 2 Neighboring gene putative pentatricopeptide repeat-containing protein At1g68930 Neighboring gene putative U-box domain-containing protein 42 Neighboring gene uncharacterized LOC111831879

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006238922 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor bHLH49

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238922.1 Reference Caprub1_0

    Range
    9285245..9288249
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006302106.2 → XP_006302168.1  transcription factor bHLH49

    See identical proteins and their annotated locations for XP_006302168.1

    UniProtKB/TrEMBL
    R0GH97
    Conserved Domains (1) summary
    smart00353
    Location:328 → 377
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases