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LOC17894309 calmodulin-binding transcription activator 4 [ Capsella rubella ]

Gene ID: 17894309, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17894309
Gene description
calmodulin-binding transcription activator 4
Locus tag
CARUB_v10022369mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17894309 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238922.1 (8451486..8456999, complement)

NW_006238922.1Genomic Context describing neighboring genes Neighboring gene aldehyde oxidase GLOX1 Neighboring gene probable plastidic glucose transporter 2 Neighboring gene probable DNA primase large subunit Neighboring gene ranBP2-type zinc finger protein At1g67325

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238922 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmodulin-binding transcription activator 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238922.1 Reference Caprub1_0

    Range
    8451486..8456999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023787320.1 → XP_023643088.1  calmodulin-binding transcription activator 4 isoform X2

    UniProtKB/TrEMBL
    R0GG07

  2. XM_023787319.1 → XP_023643087.1  calmodulin-binding transcription activator 4 isoform X1

    UniProtKB/TrEMBL
    R0GG07
Nucleotide Protein
Heading Accession and Version

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