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LOC17893709 squamosa promoter-binding-like protein 5 [ Capsella rubella ]

Gene ID: 17893709, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17893709
Gene description
squamosa promoter-binding-like protein 5
Locus tag
CARUB_v10014636mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17893709 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238921.1 (5250403..5252473, complement)

NW_006238921.1Genomic Context describing neighboring genes Neighboring gene protein RICE SALT SENSITIVE 3 Neighboring gene uncharacterized LOC17890677 Neighboring gene probable protein phosphatase 2C 39 Neighboring gene uncharacterized LOC17892012 Neighboring gene 3-hydroxybutyryl-CoA dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238921 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding-like protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238921.1 Reference Caprub1_0

    Range
    5250403..5252473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006298491.2 → XP_006298553.2  squamosa promoter-binding-like protein 5

    UniProtKB/TrEMBL
    R0G7J6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases