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LOC17890511 transcription factor RF2a [ Capsella rubella ]

Gene ID: 17890511, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17890511
Gene description
transcription factor RF2a
Locus tag
CARUB_v10023063mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17890511 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238920.1 (74302..76881, complement)

NW_006238920.1Genomic Context describing neighboring genes Neighboring gene auxin-induced protein X15 Neighboring gene auxin-responsive protein SAUR50 Neighboring gene vegetative cell wall protein gp1 Neighboring gene uncharacterized LOC17889731

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238920 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor RF2a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238920.1 Reference Caprub1_0

    Range
    74302..76881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023784092.1 → XP_023639860.1  transcription factor RF2a

    UniProtKB/TrEMBL
    R0HSG3
    Conserved Domains (2) summary
    cd14703
    Location:351 → 400
    bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    cl27403
    Location:318 → 440
    zf-RING_7; C4-type zinc ribbon domain

  2. XM_006294008.2 → XP_006294070.1  transcription factor RF2a

    See identical proteins and their annotated locations for XP_006294070.1

    UniProtKB/TrEMBL
    R0HSG3
    Conserved Domains (2) summary
    cd14703
    Location:351 → 400
    bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    cl27403
    Location:318 → 440
    zf-RING_7; C4-type zinc ribbon domain
Nucleotide Protein
Heading Accession and Version

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