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LOC17890392 beta-amylase 7 [ Capsella rubella ]

Gene ID: 17890392, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17890392
Gene description
beta-amylase 7
Locus tag
CARUB_v10022771mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17890392 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238920.1 (14112673..14117456, complement)

NW_006238920.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC17888388 Neighboring gene UPF0187 protein At2g45870, chloroplastic Neighboring gene rop guanine nucleotide exchange factor 4 Neighboring gene uncharacterized LOC17889153

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238920 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in polysaccharide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-amylase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238920.1 Reference Caprub1_0

    Range
    14112673..14117456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006293724.2 → XP_006293786.1  beta-amylase 7

    See identical proteins and their annotated locations for XP_006293786.1

    UniProtKB/TrEMBL
    R0HB94
    Conserved Domains (3) summary
    PLN02905
    Location:1 → 683
    PLN02905; beta-amylase
    pfam05687
    Location:64 → 203
    BES1_N; BES1/BZR1 plant transcription factor, N-terminal
    cl07893
    Location:245 → 676
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
Heading Accession and Version

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