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LOC17888977 zinc finger CCCH domain-containing protein 26 [ Capsella rubella ]

Gene ID: 17888977, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17888977
Gene description
zinc finger CCCH domain-containing protein 26
Locus tag
CARUB_v10023174mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17888977 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238920.1 (8720206..8723606, complement)

NW_006238920.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC17889151 Neighboring gene protein disulfide-isomerase 2-3 Neighboring gene protein argonaute 6 Neighboring gene E3 ubiquitin-protein ligase COP1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238920 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 26

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238920.1 Reference Caprub1_0

    Range
    8720206..8723606 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006294117.2 → XP_006294179.1  zinc finger CCCH domain-containing protein 26

    See identical proteins and their annotated locations for XP_006294179.1

    UniProtKB/TrEMBL
    R0FVV6
    Conserved Domains (1) summary
    pfam00642
    Location:264 → 290
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Nucleotide Protein
Heading Accession and Version

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