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LOC17887913 protein FAR1-RELATED SEQUENCE 3 [ Capsella rubella ]

Gene ID: 17887913, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17887913
Gene description
protein FAR1-RELATED SEQUENCE 3
Locus tag
CARUB_v10022618mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17887913 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238920.1 (5704026..5708309, complement)

NW_006238920.1Genomic Context describing neighboring genes Neighboring gene nitrate regulatory gene2 protein Neighboring gene serrate RNA effector molecule Neighboring gene uncharacterized LOC17890082 Neighboring gene uncharacterized LOC17889086

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238920 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FAR1-RELATED SEQUENCE 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238920.1 Reference Caprub1_0

    Range
    5704026..5708309 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006293600.2 → XP_006293662.1  protein FAR1-RELATED SEQUENCE 3 isoform X1

    See identical proteins and their annotated locations for XP_006293662.1

    UniProtKB/TrEMBL
    R0HMV5
    Conserved Domains (5) summary
    smart00575
    Location:557 → 581
    ZnF_PMZ; plant mutator transposase zinc finger
    PLN03097
    Location:1 → 671
    FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
    pfam03101
    Location:64 → 135
    FAR1; FAR1 DNA-binding domain
    pfam10551
    Location:270 → 358
    MULE; MULE transposase domain
    cl06336
    Location:792 → 852
    Commd; COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene MURR1 product, and related proteins. Presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in ...

  2. XM_023785055.1 → XP_023640823.1  protein FAR1-RELATED SEQUENCE 3 isoform X2

Nucleotide Protein
Heading Accession and Version

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