U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC17887230 homeobox-leucine zipper protein ATHB-12 [ Capsella rubella ]

Gene ID: 17887230, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC17887230
Gene description
homeobox-leucine zipper protein ATHB-12
Locus tag
CARUB_v10017952mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC17887230 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238919.1 (13147409..13148714, complement)

NW_006238919.1Genomic Context describing neighboring genes Neighboring gene pollen-specific leucine-rich repeat extensin-like protein 1 Neighboring gene cytochrome P450 78A9 Neighboring gene uncharacterized LOC111830551 Neighboring gene auxin-responsive protein SAUR32

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006238919 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
homeobox-leucine zipper protein ATHB-12

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238919.1 Reference Caprub1_0

    Range
    13147409..13148714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006291719.2 → XP_006291781.1  homeobox-leucine zipper protein ATHB-12

    See identical proteins and their annotated locations for XP_006291781.1

    UniProtKB/TrEMBL
    R0H5X0
    Conserved Domains (2) summary
    pfam00046
    Location:34 → 84
    Homeobox; Homeobox domain
    pfam02183
    Location:86 → 127
    HALZ; Homeobox associated leucine zipper
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases