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F54D11.4 DEK_C domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178852, updated on 28-Oct-2024

Summary

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Official Symbol
F54D11.4
Official Full Name
DEK_C domain-containing protein
Primary source
WormBase:WBGene00018814
Locus tag
CELE_F54D11.4
See related
AllianceGenome:WB:WBGene00018814
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See F54D11.4 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (4616151..4617777)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Bms1-type G domain-containing protein Neighboring gene transcellular chaperone signaling (x)cross tissue Neighboring gene Protein sumv-2 Neighboring gene Phosphoethanolamine N-methyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SUMOylation of the chromodomain factor MRG-1 in C. elegans affects chromatin-regulatory dynamics. Baytek G, et al. Biotechniques, 2022 Jun. PMID 35698829
  2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

General protein information

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Preferred Names
DEK_C domain-containing protein
NP_001263835.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    4616151..4617777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001276906.4 → NP_001263835.2  DEK_C domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A486WXG9
    Conserved Domains (1) summary
    pfam06075
    Location:12 → 132
    DUF936; Plant protein of unknown function (DUF936)
Nucleotide Protein
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