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LOC17883667 basic leucine zipper 63 [ Capsella rubella ]

Gene ID: 17883667, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17883667
Gene description
basic leucine zipper 63
Locus tag
CARUB_v10001450mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17883667 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238918.1 (10544602..10546490, complement)

NW_006238918.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene putative defensin-like protein 234 Neighboring gene uncharacterized LOC111829952 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238918 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic leucine zipper 63

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238918.1 Reference Caprub1_0

    Range
    10544602..10546490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006288150.2 → XP_006288212.1  basic leucine zipper 63 isoform X2

    See identical proteins and their annotated locations for XP_006288212.1

    UniProtKB/TrEMBL
    R0FFU1, R0H885
    Conserved Domains (3) summary
    cd14686
    Location:160 → 211
    bZIP; coiled coil [structural motif]
    pfam12498
    Location:226 → 316
    bZIP_C; Basic leucine-zipper C terminal
    cl21462
    Location:160 → 211
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_023780765.1 → XP_023636533.1  basic leucine zipper 63 isoform X1

    UniProtKB/TrEMBL
    R0FFU1
Nucleotide Protein
Heading Accession and Version

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