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LOC17881760 transcription factor MYB3R-4 [ Capsella rubella ]

Gene ID: 17881760, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17881760
Gene description
transcription factor MYB3R-4
Locus tag
CARUB_v10000155mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17881760 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238918.1 (3632635..3637717)

NW_006238918.1Genomic Context describing neighboring genes Neighboring gene beta-adaptin-like protein A Neighboring gene coiled-coil domain-containing protein 25 Neighboring gene aspartate aminotransferase 3, chloroplastic Neighboring gene uncharacterized LOC111830127

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238918 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYB3R-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238918.1 Reference Caprub1_0

    Range
    3632635..3637717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006286945.2 → XP_006287007.1  transcription factor MYB3R-4

    See identical proteins and their annotated locations for XP_006287007.1

    UniProtKB/TrEMBL
    R0H5A0
    Conserved Domains (2) summary
    pfam00249
    Location:32 → 78
    Myb_DNA-binding; Myb-like DNA-binding domain
    cl28544
    Location:84 → 185
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

  2. XM_023781284.1 → XP_023637052.1  transcription factor MYB3R-4

    UniProtKB/TrEMBL
    R0H5A0
    Conserved Domains (2) summary
    pfam00249
    Location:32 → 78
    Myb_DNA-binding; Myb-like DNA-binding domain
    cl28544
    Location:84 → 185
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

  3. XM_023781283.1 → XP_023637051.1  transcription factor MYB3R-4

    UniProtKB/TrEMBL
    R0H5A0
    Conserved Domains (2) summary
    pfam00249
    Location:32 → 78
    Myb_DNA-binding; Myb-like DNA-binding domain
    cl28544
    Location:84 → 185
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Nucleotide Protein
Heading Accession and Version

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